annotation.conf 727 Bytes

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[entities]

Protein
Simple_chemical
Complex
Organism

[events]

Gene_expression Theme:Protein
Binding Theme+:Protein
Positive_regulation Theme:<EVENT>|Protein, Cause?:<EVENT>|Protein
Negative_regulation Theme:<EVENT>|Protein, Cause?:<EVENT>|Protein

[relations]

Part-of Arg1:Protein, Arg2:Complex
Member-of Arg1:Protein, Arg2:Complex

# TODO: Should these really be called "Equivalent" instead of "Equiv"?
Equiv Arg1:Protein, Arg2:Protein, <REL-TYPE>:symmetric-transitive
Equiv Arg1:Simple_chemical, Arg2:Simple_chemical, <REL-TYPE>:symmetric-transitive
Equiv Arg1:Organism, Arg2:Organism, <REL-TYPE>:symmetric-transitive

[attributes]

Negation        Arg:<EVENT>
Confidence        Arg:<EVENT>, Value:Possible|Likely|Certain