annotation.conf
1.82 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
# -*- Mode: Text; tab-width: 8; indent-tabs-mode: nil; coding: utf-8; -*-
# vim:set ft=conf ts=2 sw=2 sts=2 autoindent:
[entities]
Protein
Complex
Entity
Drug
Simple_molecule
RNA
Ion
Tag
Receptor
[relations]
Equiv Arg1:Protein, Arg2:Protein, <REL-TYPE>:symmetric-transitive
Equiv Arg1:Entity, Arg2:Entity, <REL-TYPE>:symmetric-transitive
Equiv Arg1:Complex, Arg2:Complex, <REL-TYPE>:symmetric-transitive
Equiv Arg1:Tag, Arg2:Tag, <REL-TYPE>:symmetric-transitive
Equiv Arg1:Simple_molecule, Arg2:Simple_molecule, <REL-TYPE>:symmetric-transitive
<OVERLAP> Arg1:Protein, Arg2:Complex, <OVL-TYPE>:contain
<OVERLAP> Arg1:Protein, Arg2:Entity, <OVL-TYPE>:contain
<OVERLAP> Arg1:Drug, Arg2:Entity, <OVL-TYPE>:contain
<OVERLAP> Arg1:Drug, Arg2:Complex, <OVL-TYPE>:contain
[events]
<BIOMOLECULE>=Protein|Complex
Gene_expression Theme:Protein
Transcription Theme:RNA
Translation Theme:Protein
Protein_catabolism Theme:Protein
# NOTE: capitalization of "toLoc" etc. differs from that in many other corpora
Localization Theme+:<ENTITY>, toLoc?:Entity, atLoc?:Entity, fromLoc?:Entity
Binding Theme*:Simple_molecule|Protein|Receptor|Complex, Product*:Complex, Site*:Entity
Dissociation Complex*:Complex, Participant*:<BIOMOLECULE>
----------------------------------------
Phosphorylation Theme:<BIOMOLECULE>, Site?:Entity
Dephosphorylation Theme:<BIOMOLECULE>, Site?:Entity
Ubiquitination Theme:<BIOMOLECULE>, Site?:Entity
Deubiquitination Theme:<BIOMOLECULE>, Site?:Entity
----------------------------------------
Regulation Theme:<ANY>, Cause?:<ANY>, Site?:Entity, CSite?:Entity
Positive_regulation Theme:<ANY>, Cause?:<ANY>, Site?:Entity, CSite?:Entity
Catalysis Theme:<EVENT>, Cause?:<BIOMOLECULE>, Site?:Entity, CSite?:Entity
Negative_regulation Theme:<ANY>, Cause?:<ANY>, Site?:Entity, CSite?:Entity
[attributes]
Negation Arg:<EVENT>
Speculation Arg:<EVENT>