visual.conf
1.98 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
# visual configuration for EVEX DB data (http://evexdb.org/)
[labels]
GGP | Gene or gene product | GGP
Regulation | Regulation | Reg
Positive_regulation | Positive regulation | +Regulation | +Reg
Negative_regulation | Negative regulation | -Regulation | -Reg
Binding | Binding | Bind
Gene_expression | Gene expression | Expression
Transcription | Transcription | Trns
Localization | Localization | Locl
Protein_catabolism | Protein catabolism | Catabolism | Catab
Phosphorylation | Phosphorylation | Phos
PhosphorylationEPI | Phosphorylation | Phos
Dephosphorylation | Dephosphorylation | -Phos
Acetylation | Acetylation | Acet
Deacetylation | Deacetylation | -Acet
Hydroxylation | Hydroxylation | Hydr
Dehydroxylation | Dehydroxylation | -Hydr
Glycosylation | Glycosylation | Glyc
Deglycosylation | Deglycosylation | -Glyc
Methylation | Methylation | Meth
Demethylation | Demethylation | -Meth
Ubiquitination | Ubiquitination | Ubiq
Deubiquitination | Deubiquitination | -Ubiq
DNA_methylation | DNA methylation | DNA meth
DNA_demethylation | DNA demethylation | DNA -meth
Catalysis | Catalysis | Catal
[drawing]
SPAN_DEFAULT fgColor:black, bgColor:lightgreen, borderColor:darken
ARC_DEFAULT color:black, arrowHead:triangle-5
ATTRIBUTE_DEFAULT glyph:*
# entities
GGP bgColor:#7fa2ff
Entity bgColor:#b4c8ff
# events
Positive_regulation bgColor:#e0ff00
Catalysis bgColor:#e0ff00
Regulation bgColor:#ffff00
Negative_regulation bgColor:#ffe000
Deacetylation bgColor:#18c59a
Deglycosylation bgColor:#18c59a
Dehydroxylation bgColor:#18c59a
Demethylation bgColor:#18c59a
Dephosphorylation bgColor:#18c59a
Deubiquitination bgColor:#18c59a
DNA_demethylation bgColor:#18c59a
Deacylation bgColor:#18c59a
Dealkylation bgColor:#18c59a
Depalmitoylation bgColor:#18c59a
Delipidation bgColor:#18c59a
Deprenylation bgColor:#18c59a
Deneddylation bgColor:#18c59a
Desumoylation bgColor:#18c59a
# attributes
Negation box:crossed, glyph:<NONE>, dashArray:<NONE>
Speculation dashArray:3-3, glyph:<NONE>
Confidence glyph:↑|↔|↓