annotation.conf
1.11 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
# -*- Mode: Text; tab-width: 8; indent-tabs-mode: nil; coding: utf-8; -*-
# vim:set ft=conf ts=2 sw=2 sts=2 autoindent:
# Simple text-based definitions of entity, relation and event types
# and event attributes for the BioNLP Shared Task 2011 GE task.
[entities]
Protein
Entity
[relations]
Equiv Arg1:Protein, Arg2:Protein, <REL-TYPE>:symmetric-transitive
# (No entity nestings permitted for GE. Could be defined using special
# relation type ENTITY-NESTING if necessary.)
[events]
Gene_expression Theme:Protein
Transcription Theme:Protein
Protein_catabolism Theme:Protein
Localization Theme:Protein, ToLoc?:Entity, AtLoc?:Entity
Binding Theme+:Protein, Site*:Entity
----------------------------------------
Phosphorylation Theme:Protein, Site?:Entity
----------------------------------------
Regulation Theme:<EVENT>|Protein, Cause?:<EVENT>|Protein, Site?:Entity, CSite?:Entity
Positive_regulation Theme:<EVENT>|Protein, Cause?:<EVENT>|Protein, Site?:Entity, CSite?:Entity
Negative_regulation Theme:<EVENT>|Protein, Cause?:<EVENT>|Protein, Site?:Entity, CSite?:Entity
[attributes]
Negation Arg:<EVENT>
Speculation Arg:<EVENT>