annotation.conf
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# -*- Mode: Text; tab-width: 8; indent-tabs-mode: nil; coding: utf-8; -*-
# vim:set ft=conf ts=2 sw=2 sts=2 autoindent:
# Simple text-based definitions of entity, relation and event types
# and event attributes for the BioNLP Shared Task 2011 EPI task.
[entities]
Protein
Entity
[relations]
Equiv Arg1:Protein, Arg2:Protein, <REL-TYPE>:symmetric-transitive
Equiv Arg1:Entity, Arg2:Entity, <REL-TYPE>:symmetric-transitive
# (No entity nestings permitted in EPI. Could be defined using special
# relation type ENTITY-NESTING if necessary.)
[events]
Catalysis Theme:<EVENT>, Cause:Protein
----------------------------------------
DNA_methylation|GO:0006306 Theme:Protein, Site?:Entity
DNA_demethylation|GO:0080111 Theme:Protein, Site?:Entity
----------------------------------------
Acetylation|GO:0006473 Theme:Protein, Site?:Entity, Contextgene?:Protein
Methylation|GO:0006479 Theme:Protein, Site?:Entity, Contextgene?:Protein
Glycosylation|GO:0006486 Theme:Protein, Site?:Entity, Sidechain?:Entity
Hydroxylation|GO:0018126 Theme:Protein, Site?:Entity
Phosphorylation|GO:0006468 Theme:Protein, Site?:Entity
Ubiquitination|GO:0016567 Theme:Protein, Site?:Entity
----------------------------------------
Deacetylation|GO:0006476 Theme:Protein, Site?:Entity, Contextgene?:Protein
Demethylation|GO:0006482 Theme:Protein, Site?:Entity, Contextgene?:Protein
Deglycosylation|GO:0006517 Theme:Protein, Site?:Entity, Sidechain?:Entity
Dehydroxylation|GO:------- Theme:Protein, Site?:Entity
Dephosphorylation|GO:0006470 Theme:Protein, Site?:Entity
Deubiquitination|GO:0016579 Theme:Protein, Site?:Entity
[attributes]
Negation Arg:<EVENT>
Speculation Arg:<EVENT>