visual.conf
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# Visual configuration for BioNLP Shared Task 2013
# Pathway Curation (PC) task
[labels]
Gene_or_gene_product | Gene or gene product | GGP
Simple_chemical | Simple chemical | Chemical | Chem
Cellular_component | Cellular component | Cell comp
Gene_expression | Gene expression | Expression | Expr
Transcription | Transcription
Translation | Translation
Binding | Binding | Bind
Regulation | Regulation | Reg
Positive_regulation | Positive regulation | +Regulation | +Reg
Negative_regulation | Negative regulation | -Regulation | -Reg
Phosphorylation | Phosphorylation | Phos
Dephosphorylation | Dephosphorylation | -Phos
Acetylation | Acetylation | Acet
Deacetylation | Deacetylation | -Acet
Hydroxylation | Hydroxylation | Hydr
Dehydroxylation | Dehydroxylation | -Hydr
Glycosylation | Glycosylation | Glyc
Deglycosylation | Deglycosylation | -Glyc
Methylation | Methylation | Meth
Demethylation | Demethylation | -Meth
Ubiquitination | Ubiquitination | Ubiq
Deubiquitination | Deubiquitination | -Ubiq
DNA_methylation | DNA methylation | DNA meth
DNA_demethylation | DNA demethylation | DNA -meth
### Relation types
Equiv | Equiv | Eq
### Role types
Theme | Theme | Th
Cause | Cause | Ca
Site | Site | Si
Product | Product | Pr
Participant | Participant | Pa
[drawing]
SPAN_DEFAULT fgColor:black, bgColor:lightgreen, borderColor:darken
ARC_DEFAULT color:black, arrowHead:triangle-5
ATTRIBUTE_DEFAULT glyph:*
Regulation bgColor:#ffff00
Positive_regulation bgColor:#e0ff00
Activation bgColor:#e0ff00
Negative_regulation bgColor:#ffe000
Inactivation bgColor:#ffe000
Simple_chemical bgColor:#9fdfff
Gene_or_gene_product bgColor:#8fb2ff
Complex bgColor:#8f97ff
Cellular_component bgColor:#bf82ff
Cause color:#007700, arrowHead:triangle-5
Site color:#0000aa, arrowHead:triangle-5
Negation box:crossed, glyph:<NONE>, dashArray:<NONE>
Speculation dashArray:3-3, glyph:<NONE>
Equiv dashArray:3-3, arrowHead:none