annotation.conf
2.35 KB
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[entities]
!Anatomical_entity
!Anatomical_structure
Organism_subdivision
Anatomical_system
Organ
Multi-tissue_structure
Tissue
Cell
Developing_anatomical_structure
Cellular_component
Organism_substance
Immaterial_anatomical_entity
Pathological_formation
Cancer
[relations]
# fragment (discontinuous span)
frag Arg1:Organism_subdivision, Arg2:Organism_subdivision
frag Arg1:Anatomical_system, Arg2:Anatomical_system
frag Arg1:Organ, Arg2:Organ
frag Arg1:Multi-tissue_structure, Arg2:Multi-tissue_structure
frag Arg1:Tissue, Arg2:Tissue
frag Arg1:Cell, Arg2:Cell
frag Arg1:Developing_anatomical_structure, Arg2:Developing_anatomical_structure
frag Arg1:Cellular_component, Arg2:Cellular_component
frag Arg1:Organism_substance, Arg2:Organism_substance
frag Arg1:Immaterial_anatomical_entity, Arg2:Immaterial_anatomical_entity
frag Arg1:Pathological_formation, Arg2:Pathological_formation
frag Arg1:Cancer, Arg2:Cancer
# part-of (note: should be more constrained)
Part-of Arg1:<ENTITY>, Arg2:<ENTITY>
# equivalence (abbreviations and local aliases)
Equiv Arg1:Organism_subdivision, Arg2:Organism_subdivision, <REL-TYPE>:symmetric-transitive
Equiv Arg1:Anatomical_system, Arg2:Anatomical_system, <REL-TYPE>:symmetric-transitive
Equiv Arg1:Organ, Arg2:Organ, <REL-TYPE>:symmetric-transitive
Equiv Arg1:Multi-tissue_structure, Arg2:Multi-tissue_structure, <REL-TYPE>:symmetric-transitive
Equiv Arg1:Tissue, Arg2:Tissue, <REL-TYPE>:symmetric-transitive
Equiv Arg1:Cell, Arg2:Cell, <REL-TYPE>:symmetric-transitive
Equiv Arg1:Developing_anatomical_structure, Arg2:Developing_anatomical_structure, <REL-TYPE>:symmetric-transitive
Equiv Arg1:Cellular_component, Arg2:Cellular_component, <REL-TYPE>:symmetric-transitive
Equiv Arg1:Organism_substance, Arg2:Organism_substance, <REL-TYPE>:symmetric-transitive
Equiv Arg1:Immaterial_anatomical_entity, Arg2:Immaterial_anatomical_entity, <REL-TYPE>:symmetric-transitive
Equiv Arg1:Pathological_formation, Arg2:Pathological_formation, <REL-TYPE>:symmetric-transitive
Equiv Arg1:Cancer, Arg2:Cancer, <REL-TYPE>:symmetric-transitive
[attributes]
# all binary flags
Processed Arg:<ENTITY>
Plant Arg:<ENTITY>
Pathological Arg:<ENTITY>
Developing Arg:<ENTITY>
[events]
# none defined.