visual.conf
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# -*- Mode: Text; tab-width: 8; indent-tabs-mode: nil; coding: utf-8; -*-
# vim:set ft=conf ts=2 sw=2 sts=2 autoindent:
[labels]
### Entity labels
Protein | Protein | Pro | Pr | P
Entity | Entity | Ent | En | E
Complex
Drug
Simple_molecule | Simple molecule | Smpl mol
### Relation labels
Equiv | Equiv | Eq
### Event labels
Gene_expression | Gene expression | Expression | Expr
Transcription | Transcription | Trns
Protein_catabolism | Protein catabolism | Catabolism | Catab
Localization | Localization | Locl
Binding | Binding | Bind
Phosphorylation | Phosphorylation | Phos
Dephosphorylation | Dephosphorylation | -Phos
Ubiquitination | Ubiquitination | Ubiq
Deubiquitination | Deubiquitination | -Ubiq
Regulation | Regulation | Reg
Positive_regulation | Positive regulation | +Regulation | +Reg
Negative_regulation | Negative regulation | -Regulation | -Reg
### Role labels
Theme | Theme | Th
Cause | Cause | Ca
Site | Site | Si
CSite | CSite | CSi
Product | Prod
[drawing]
### Defaults
SPAN_DEFAULT fgColor:black, bgColor:lightgreen, borderColor:darken
ARC_DEFAULT color:black, dashArray:-, arrowHead:triangle-5
ATTRIBUTE_DEFAULT glyph:*
### Entity drawing
Protein bgColor:#7fa2ff
Entity bgColor:#b4c8ff
Simple_molecule bgColor:#8fcfff
### Event drawing
Regulation bgColor:#ffff00
Positive_regulation bgColor:#e0ff00
Catalysis bgColor:#e0ff00
Negative_regulation bgColor:#ffe000
Dephosphorylation bgColor:#18c59a
Deubiquitination bgColor:#18c59a
Dissociation bgColor:#18c59a
### Arc drawing
Equiv dashArray:3-3, arrowHead:none
Cause color:#007700
Site color:#0000aa
CSite color:#0000aa
ToLoc color:#0000cc
AtLoc color:#0000cc
Product color:#000077
# Attributes
Negation box:crossed, glyph:<NONE>, dashArray:<NONE>
Speculation dashArray:3-3, glyph:<NONE>