visual.conf
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# -*- Mode: Text; tab-width: 8; indent-tabs-mode: nil; coding: utf-8; -*-
# vim:set ft=conf ts=2 sw=2 sts=2 autoindent:
[labels]
### Entity labels
Protein | Protein | Pro | Pr | P
Entity | Entity | Ent | En | E
### Relation labels
Equiv | Equiv | Eq
### Event labels
Acetylation | Acetylation | Acet
Glycosylation | Glycosylation | Glyc
Hydroxylation | Hydroxylation | Hydr
Methylation | Methylation | Meth
Phosphorylation | Phosphorylation | Phos
Ubiquitination | Ubiquitination | Ubiq
Deacetylation | Deacetylation | -Acet
Deglycosylation | Deglycosylation | -Glyc
Dehydroxylation | Dehydroxylation | -Hydr
Demethylation | Demethylation | -Meth
Dephosphorylation | Dephosphorylation | -Phos
Deubiquitination | Deubiquitination | -Ubiq
DNA_methylation | DNA methylation | DNA meth
DNA_demethylation | DNA demethylation | DNA -meth
Catalysis | Catalysis | Catal
### Role labels
Theme | Theme | Th
Cause | Cause | Ca
Site | Site | Si
Sidechain | Sidechain | SCh
Contextgene | Contextgene | CGn
[drawing]
### Defaults
SPAN_DEFAULT fgColor:black, bgColor:lightgreen, borderColor:darken
ARC_DEFAULT color:black, dashArray:-, arrowHead:triangle-5
ATTRIBUTE_DEFAULT glyph:*
### Entity drawing
Protein bgColor:#7fa2ff
Entity bgColor:#b4c8ff
### Event drawing
Deacetylation bgColor:#18c59a
Deglycosylation bgColor:#18c59a
Dehydroxylation bgColor:#18c59a
Demethylation bgColor:#18c59a
Dephosphorylation bgColor:#18c59a
Deubiquitination bgColor:#18c59a
DNA_demethylation bgColor:#18c59a
Catalysis bgColor:#e0ff00
### Arc drawing
Equiv dashArray:3-3, arrowHead:none
Cause color:#007700
Site color:#0000aa
Sidechain color:#303030
Contextgene color:#303030
# Attributes
Negation box:crossed, glyph:<NONE>, dashArray:<NONE>
Speculation dashArray:3-3, glyph:<NONE>