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<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml" lang="en"><head><meta http-equiv="Content-Type" content="text/html;charset=UTF-8"/><link rel="stylesheet" href="../jacoco-resources/report.css" type="text/css"/><link rel="shortcut icon" href="../jacoco-resources/report.gif" type="image/gif"/><title>MtasDataItemFull.java</title><link rel="stylesheet" href="../jacoco-resources/prettify.css" type="text/css"/><script type="text/javascript" src="../jacoco-resources/prettify.js"></script></head><body onload="window['PR_TAB_WIDTH']=4;prettyPrint()"><div class="breadcrumb" id="breadcrumb"><span class="info"><a href="../jacoco-sessions.html" class="el_session">Sessions</a></span><a href="../index.html" class="el_report">MTAS</a> &gt; <a href="index.source.html" class="el_package">mtas.codec.util.collector</a> &gt; <span class="el_source">MtasDataItemFull.java</span></div><h1>MtasDataItemFull.java</h1><pre class="source lang-java linenums">package mtas.codec.util.collector;

import java.io.IOException;
import java.io.Serializable;
import java.util.HashMap;
import java.util.Map;
import java.util.Map.Entry;
import java.util.Set;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import org.apache.commons.math3.stat.descriptive.DescriptiveStatistics;
import mtas.codec.util.CodecUtil;

/**
 * The Class MtasDataItemFull.
 *
 * @param &lt;T1&gt; the generic type
 * @param &lt;T2&gt; the generic type
 */
abstract class MtasDataItemFull&lt;T1 extends Number &amp; Comparable&lt;T1&gt;, T2 extends Number &amp; Comparable&lt;T2&gt;&gt;
    extends MtasDataItem&lt;T1, T2&gt; implements Serializable {

  /** The Constant serialVersionUID. */
  private static final long serialVersionUID = 1L;

  /** The full values. */
  public T1[] fullValues;

  /** The operations. */
  protected MtasDataOperations&lt;T1, T2&gt; operations;

  /** The stats. */
<span class="fc" id="L33">  protected DescriptiveStatistics stats = null;</span>

  /** The fp stats function items. */
<span class="fc" id="L36">  private Pattern fpStatsFunctionItems = Pattern</span>
<span class="fc" id="L37">      .compile(&quot;(([^\\(,]+)(\\(([^\\)]*)\\))?)&quot;);</span>

  /**
   * Instantiates a new mtas data item full.
   *
   * @param value the value
   * @param sub the sub
   * @param statsItems the stats items
   * @param sortType the sort type
   * @param sortDirection the sort direction
   * @param errorNumber the error number
   * @param errorList the error list
   * @param operations the operations
   * @param sourceNumber the source number
   */
  public MtasDataItemFull(T1[] value, MtasDataCollector&lt;?, ?&gt; sub,
      Set&lt;String&gt; statsItems, String sortType, String sortDirection,
      int errorNumber, Map&lt;String, Integer&gt; errorList,
      MtasDataOperations&lt;T1, T2&gt; operations, int sourceNumber) {
<span class="fc" id="L56">    super(sub, statsItems, sortType, sortDirection, errorNumber, errorList,</span>
        sourceNumber);
<span class="fc" id="L58">    this.fullValues = value;</span>
<span class="fc" id="L59">    this.operations = operations;</span>
<span class="fc" id="L60">  }</span>

  /*
   * (non-Javadoc)
   *
   * @see mtas.codec.util.DataCollector.MtasDataItem#add(mtas.codec.util.
   * DataCollector.MtasDataItem)
   */
  @Override
  public void add(MtasDataItem&lt;T1, T2&gt; newItem) throws IOException {
<span class="nc bnc" id="L70" title="All 2 branches missed.">    if (newItem instanceof MtasDataItemFull) {</span>
<span class="nc" id="L71">      MtasDataItemFull&lt;T1, T2&gt; newTypedItem = (MtasDataItemFull&lt;T1, T2&gt;) newItem;</span>
<span class="nc" id="L72">      T1[] tmpValue = operations</span>
<span class="nc" id="L73">          .createVector1(fullValues.length + newTypedItem.fullValues.length);</span>
<span class="nc" id="L74">      System.arraycopy(fullValues, 0, tmpValue, 0, fullValues.length);</span>
<span class="nc" id="L75">      System.arraycopy(newTypedItem.fullValues, 0, tmpValue, fullValues.length,</span>
          newTypedItem.fullValues.length);
<span class="nc" id="L77">      fullValues = tmpValue;</span>
<span class="nc" id="L78">      recomputeComparableSortValue = true;</span>
<span class="nc" id="L79">    } else {</span>
<span class="nc" id="L80">      throw new IOException(&quot;can only add MtasDataItemFull&quot;);</span>
    }
<span class="nc" id="L82">  }</span>

  /**
   * Creates the stats.
   */
  protected void createStats() {
<span class="pc bpc" id="L88" title="1 of 2 branches missed.">    if (stats == null) {</span>
<span class="fc" id="L89">      stats = new DescriptiveStatistics();</span>
<span class="fc bfc" id="L90" title="All 2 branches covered.">      for (T1 value : fullValues) {</span>
<span class="fc" id="L91">        stats.addValue(value.doubleValue());</span>
      }
    }
<span class="fc" id="L94">  }</span>

  /**
   * Gets the distribution.
   *
   * @param arguments the arguments
   * @return the distribution
   */
  abstract protected HashMap&lt;String, Object&gt; getDistribution(String arguments);

  /*
   * (non-Javadoc)
   *
   * @see mtas.codec.util.DataCollector.MtasDataItem#rewrite()
   */
  @Override
  public Map&lt;String, Object&gt; rewrite(boolean showDebugInfo) throws IOException {
<span class="fc" id="L111">    createStats();</span>
<span class="fc" id="L112">    Map&lt;String, Object&gt; response = new HashMap&lt;&gt;();</span>
<span class="fc bfc" id="L113" title="All 2 branches covered.">    for (String statsItem : getStatsItems()) {</span>
<span class="fc bfc" id="L114" title="All 2 branches covered.">      if (statsItem.equals(CodecUtil.STATS_TYPE_SUM)) {</span>
<span class="fc" id="L115">        response.put(statsItem, stats.getSum());</span>
<span class="fc bfc" id="L116" title="All 2 branches covered.">      } else if (statsItem.equals(CodecUtil.STATS_TYPE_N)) {</span>
<span class="fc" id="L117">        response.put(statsItem, stats.getN());</span>
<span class="fc bfc" id="L118" title="All 2 branches covered.">      } else if (statsItem.equals(CodecUtil.STATS_TYPE_MAX)) {</span>
<span class="fc" id="L119">        response.put(statsItem, stats.getMax());</span>
<span class="fc bfc" id="L120" title="All 2 branches covered.">      } else if (statsItem.equals(CodecUtil.STATS_TYPE_MIN)) {</span>
<span class="fc" id="L121">        response.put(statsItem, stats.getMin());</span>
<span class="fc bfc" id="L122" title="All 2 branches covered.">      } else if (statsItem.equals(CodecUtil.STATS_TYPE_SUMSQ)) {</span>
<span class="fc" id="L123">        response.put(statsItem, stats.getSumsq());</span>
<span class="fc bfc" id="L124" title="All 2 branches covered.">      } else if (statsItem.equals(CodecUtil.STATS_TYPE_SUMOFLOGS)) {</span>
<span class="fc" id="L125">        response.put(statsItem,</span>
<span class="fc" id="L126">            stats.getN() * Math.log(stats.getGeometricMean()));</span>
<span class="fc bfc" id="L127" title="All 2 branches covered.">      } else if (statsItem.equals(CodecUtil.STATS_TYPE_MEAN)) {</span>
<span class="fc" id="L128">        response.put(statsItem, stats.getMean());</span>
<span class="fc bfc" id="L129" title="All 2 branches covered.">      } else if (statsItem.equals(CodecUtil.STATS_TYPE_GEOMETRICMEAN)) {</span>
<span class="fc" id="L130">        response.put(statsItem, stats.getGeometricMean());</span>
<span class="fc bfc" id="L131" title="All 2 branches covered.">      } else if (statsItem.equals(CodecUtil.STATS_TYPE_STANDARDDEVIATION)) {</span>
<span class="fc" id="L132">        response.put(statsItem, stats.getStandardDeviation());</span>
<span class="fc bfc" id="L133" title="All 2 branches covered.">      } else if (statsItem.equals(CodecUtil.STATS_TYPE_VARIANCE)) {</span>
<span class="fc" id="L134">        response.put(statsItem, stats.getVariance());</span>
<span class="fc bfc" id="L135" title="All 2 branches covered.">      } else if (statsItem.equals(CodecUtil.STATS_TYPE_POPULATIONVARIANCE)) {</span>
<span class="fc" id="L136">        response.put(statsItem, stats.getPopulationVariance());</span>
<span class="fc bfc" id="L137" title="All 2 branches covered.">      } else if (statsItem.equals(CodecUtil.STATS_TYPE_QUADRATICMEAN)) {</span>
<span class="fc" id="L138">        response.put(statsItem, Math.sqrt(stats.getSumsq()/stats.getN()));</span>
<span class="fc bfc" id="L139" title="All 2 branches covered.">      } else if (statsItem.equals(CodecUtil.STATS_TYPE_KURTOSIS)) {</span>
<span class="fc" id="L140">        response.put(statsItem, stats.getKurtosis());</span>
<span class="fc bfc" id="L141" title="All 2 branches covered.">      } else if (statsItem.equals(CodecUtil.STATS_TYPE_MEDIAN)) {</span>
<span class="fc" id="L142">        response.put(statsItem, stats.getPercentile(50));</span>
<span class="pc bpc" id="L143" title="1 of 2 branches missed.">      } else if (statsItem.equals(CodecUtil.STATS_TYPE_SKEWNESS)) {</span>
<span class="fc" id="L144">        response.put(statsItem, stats.getSkewness());</span>
      } else {
<span class="nc" id="L146">        Matcher m = fpStatsFunctionItems.matcher(statsItem);</span>
<span class="nc bnc" id="L147" title="All 2 branches missed.">        if (m.find()) {</span>
<span class="nc" id="L148">          String function = m.group(2).trim();</span>
<span class="nc bnc" id="L149" title="All 2 branches missed.">          if (function.equals(CodecUtil.STATS_FUNCTION_DISTRIBUTION)) {</span>
<span class="nc" id="L150">            response.put(statsItem, getDistribution(m.group(4)));</span>
          }
        }
      }
<span class="fc" id="L154">    }</span>
<span class="pc bpc" id="L155" title="1 of 2 branches missed.">    if (errorNumber &gt; 0) {</span>
<span class="nc" id="L156">      Map&lt;String, Object&gt; errorResponse = new HashMap&lt;&gt;();</span>
<span class="nc bnc" id="L157" title="All 2 branches missed.">      for (Entry&lt;String, Integer&gt; entry : getErrorList().entrySet()) {</span>
<span class="nc" id="L158">        errorResponse.put(entry.getKey(), entry.getValue());</span>
<span class="nc" id="L159">      }</span>
<span class="nc" id="L160">      response.put(&quot;errorNumber&quot;, errorNumber);</span>
<span class="nc" id="L161">      response.put(&quot;errorList&quot;, errorResponse);</span>
    }
<span class="pc bpc" id="L163" title="1 of 2 branches missed.">    if (showDebugInfo) {</span>
<span class="nc" id="L164">      response.put(&quot;sourceNumber&quot;, sourceNumber);</span>
<span class="nc" id="L165">      response.put(&quot;stats&quot;, &quot;full&quot;);</span>
    }
<span class="fc" id="L167">    return response;</span>
  }

  /*
   * (non-Javadoc)
   *
   * @see mtas.codec.util.collector.MtasDataItem#getCompareValueType()
   */
  @Override
  public final int getCompareValueType() throws IOException {
<span class="nc bnc" id="L177" title="All 50 branches missed.">    switch (sortType) {</span>
    case CodecUtil.STATS_TYPE_N:
<span class="nc" id="L179">      return 0;</span>
    case CodecUtil.STATS_TYPE_SUM:
    case CodecUtil.STATS_TYPE_MAX:
    case CodecUtil.STATS_TYPE_MIN:
    case CodecUtil.STATS_TYPE_SUMSQ:
<span class="nc" id="L184">      return 1;</span>
    case CodecUtil.STATS_TYPE_SUMOFLOGS:
    case CodecUtil.STATS_TYPE_MEAN:
    case CodecUtil.STATS_TYPE_GEOMETRICMEAN:
    case CodecUtil.STATS_TYPE_STANDARDDEVIATION:
    case CodecUtil.STATS_TYPE_VARIANCE:
    case CodecUtil.STATS_TYPE_POPULATIONVARIANCE:
    case CodecUtil.STATS_TYPE_QUADRATICMEAN:
    case CodecUtil.STATS_TYPE_KURTOSIS:
    case CodecUtil.STATS_TYPE_MEDIAN:
    case CodecUtil.STATS_TYPE_SKEWNESS:
<span class="nc" id="L195">      return 2;</span>
    default:
<span class="nc" id="L197">      throw new IOException(&quot;sortType &quot; + sortType + &quot; not supported&quot;);</span>
    }
  }

  /*
   * (non-Javadoc)
   *
   * @see mtas.codec.util.collector.MtasDataItem#getCompareValue0()
   */
  public final MtasDataItemNumberComparator&lt;Long&gt; getCompareValue0() {
<span class="nc" id="L207">    createStats();</span>
<span class="nc bnc" id="L208" title="All 6 branches missed.">    switch (sortType) {</span>
    case CodecUtil.STATS_TYPE_N:
<span class="nc" id="L210">      return new MtasDataItemNumberComparator&lt;&gt;(stats.getN(),</span>
          sortDirection);
    default:
<span class="nc" id="L213">      return null;</span>
    }
  }

}
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