pom.xml
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>pl.waw.ipipan.morfeusz</groupId>
<artifactId>jmorfeusz</artifactId>
<version>1.0-SNAPSHOT</version>
<packaging>jar</packaging>
<name>jmorfeusz</name>
<url>http://maven.apache.org</url>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>
<dependencies>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.11</version>
<scope>test</scope>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>2.3.2</version>
<configuration>
<source>1.5</source>
<target>1.5</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.16</version>
<configuration>
<argLine>-Djava.library.path=src/main/native</argLine>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>2.4</version>
<configuration>
<archive>
<manifest>
<mainClass>pl.waw.ipipan.morfeusz.app.App</mainClass>
</manifest>
</archive>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<executions>
<execution>
<id>create-my-bundle</id>
<phase>package</phase>
<goals>
<goal>single</goal>
</goals>
<configuration>
<finalName>JMorfeusz-${os.name}-${os.arch}</finalName>
<descriptor>src/main/assembly/bin.xml</descriptor>
<archive>
<manifest>
<mainClass>pl.waw.ipipan.morfeusz.App</mainClass>
</manifest>
</archive>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<artifactId>maven-resources-plugin</artifactId>
<version>2.6</version>
<executions>
<execution>
<id>copy-resources</id>
<!-- here the phase you need -->
<phase>validate</phase>
<goals>
<goal>copy-resources</goal>
</goals>
<configuration>
<outputDirectory>${project.build.directory}</outputDirectory>
<resources>
<resource>
<directory>src/main/native</directory>
<!--<filtering>true</filtering>-->
</resource>
</resources>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
<profiles>
<profile>
<id>otherOutputDir</id>
<build>
<directory>${outputDir}</directory>
</build>
</profile>
</profiles>
</project>